Serializable
- class openff.toolkit.utils.serialization.Serializable[source]
Mix-in to add serialization and deserialization support via JSON, YAML, BSON, TOML, MessagePack, and XML.
For more information on these formats, see: JSON, BSON, YAML, TOML, MessagePack, and XML.
To use this mix-in, the class inheriting from this class must have implemented
to_dict()
andfrom_dict()
methods that utilize dictionaries containing only serialiable Python objects.Warning
The serialization/deserialiation schemes used here place some strict constraints on what kinds of
dict
objects can be serialized. No effort is made to add further protection to ensure serialization is possible. Use with caution.Examples
Example class using
Serializable
mix-in:>>> from openff.toolkit.utils.serialization import Serializable >>> class Thing(Serializable): ... def __init__(self, description): ... self.description = description ... ... def to_dict(self): ... return { 'description' : self.description } ... ... @classmethod ... def from_dict(cls, d): ... return cls(d['description']) ... >>> # Create an example object >>> thing = Thing('blorb')
Get JSON representation:
>>> json_thing = thing.to_json()
Reconstruct an object from its JSON representation:
>>> thing_from_json = Thing.from_json(json_thing)
Get BSON representation:
>>> bson_thing = thing.to_bson()
Reconstruct an object from its BSON representation:
>>> thing_from_bson = Thing.from_bson(bson_thing)
Get YAML representation:
>>> yaml_thing = thing.to_yaml()
Reconstruct an object from its YAML representation:
>>> thing_from_yaml = Thing.from_yaml(yaml_thing)
Get MessagePack representation:
>>> messagepack_thing = thing.to_messagepack()
Reconstruct an object from its MessagePack representation:
>>> thing_from_messagepack = Thing.from_messagepack(messagepack_thing)
Get XML representation:
>>> xml_thing = thing.to_xml()
Methods
__init__
()from_bson
(serialized)Instantiate an object from a BSON serialized representation.
from_dict
(d)from_json
(serialized)Instantiate an object from a JSON serialized representation.
from_messagepack
(serialized)Instantiate an object from a MessagePack serialized representation.
from_pickle
(serialized)Instantiate an object from a pickle serialized representation.
from_toml
(serialized)Instantiate an object from a TOML serialized representation.
from_xml
(serialized)Instantiate an object from an XML serialized representation.
from_yaml
(serialized)Instantiate from a YAML serialized representation.
to_bson
()Return a BSON serialized representation.
to_dict
()to_json
([indent])Return a JSON serialized representation.
Return a MessagePack representation.
Return a pickle serialized representation.
to_toml
()Return a TOML serialized representation.
to_xml
([indent])Return an XML representation.
to_yaml
()Return a YAML serialized representation.
- to_json(indent=None) str [source]
Return a JSON serialized representation.
Specification: https://www.json.org/
- Parameters:
indent – If not None, will pretty-print with specified number of spaces for indentation
- Returns:
serialized – A JSON serialized representation of the object
- classmethod from_json(serialized: str)[source]
Instantiate an object from a JSON serialized representation.
Specification: https://www.json.org/
- Parameters:
serialized – A JSON serialized representation of the object
- Returns:
instance – An instantiated object
- to_bson()[source]
Return a BSON serialized representation.
Specification: http://bsonspec.org/
- Returns:
serialized – A BSON serialized representation of the objecft
- classmethod from_bson(serialized)[source]
Instantiate an object from a BSON serialized representation.
Specification: http://bsonspec.org/
- Parameters:
serialized – A BSON serialized representation of the object
- Returns:
instance – An instantiated object
- to_toml()[source]
Return a TOML serialized representation.
Specification: https://github.com/toml-lang/toml
- Returns:
serialized – A TOML serialized representation of the object
- classmethod from_toml(serialized)[source]
Instantiate an object from a TOML serialized representation.
Specification: https://github.com/toml-lang/toml
- Parameters:
serlialized – A TOML serialized representation of the object
- Returns:
instance – An instantiated object
- to_yaml()[source]
Return a YAML serialized representation.
Specification: http://yaml.org/
- Returns:
serialized – A YAML serialized representation of the object
- classmethod from_yaml(serialized)[source]
Instantiate from a YAML serialized representation.
Specification: http://yaml.org/
- Parameters:
serialized – A YAML serialized representation of the object
- Returns:
instance – Instantiated object
- to_messagepack()[source]
Return a MessagePack representation.
Specification: https://msgpack.org/index.html
- Returns:
serialized – A MessagePack-encoded bytes serialized representation of the object
- classmethod from_messagepack(serialized)[source]
Instantiate an object from a MessagePack serialized representation.
Specification: https://msgpack.org/index.html
- Parameters:
serialized – A MessagePack-encoded bytes serialized representation
- Returns:
instance – Instantiated object.
- to_xml(indent=2)[source]
Return an XML representation.
Specification: https://www.w3.org/XML/
- Parameters:
indent – If not None, will pretty-print with specified number of spaces for indentation
- Returns:
serialized – A MessagePack-encoded bytes serialized representation.
- classmethod from_xml(serialized)[source]
Instantiate an object from an XML serialized representation.
Specification: https://www.w3.org/XML/
- Parameters:
serialized – An XML serialized representation
- Returns:
instance – Instantiated object.
- to_pickle()[source]
Return a pickle serialized representation.
Warning
This is not recommended for safe, stable storage since the pickle specification may change between Python versions.
- Returns:
serialized – A pickled representation of the object
- classmethod from_pickle(serialized)[source]
Instantiate an object from a pickle serialized representation.
Warning
This is not recommended for safe, stable storage since the pickle specification may change between Python versions.
- Parameters:
serialized – A pickled representation of the object
- Returns:
instance – An instantiated object