Index _ | A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | Q | R | S | T | V | W _ __init__() (openff.bespokefit.utilities.logging.DeprecationWarningFilter method) A adaptive_damping (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) adaptive_factor (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) angle_denominator (openff.bespokefit.schema.targets.OptGeoTargetSchema attribute) apply_async() (in module openff.bespokefit.utilities.parallel) attenuate_weights (openff.bespokefit.schema.targets.AbInitioTargetSchema attribute) (openff.bespokefit.schema.targets.TorsionProfileTargetSchema attribute) attributes (openff.bespokefit.schema.smirnoff.AngleSMIRKS attribute) (openff.bespokefit.schema.smirnoff.BaseSMIRKSParameter attribute) (openff.bespokefit.schema.smirnoff.BondSMIRKS attribute) (openff.bespokefit.schema.smirnoff.ImproperTorsionSMIRKS attribute) (openff.bespokefit.schema.smirnoff.ProperTorsionSMIRKS attribute) (openff.bespokefit.schema.smirnoff.VdWSMIRKS attribute) B bespoke_task_type() (openff.bespokefit.schema.targets.AbInitioTargetSchema class method) (openff.bespokefit.schema.targets.BaseTargetSchema class method) (openff.bespokefit.schema.targets.OptGeoTargetSchema class method) (openff.bespokefit.schema.targets.TorsionProfileTargetSchema class method) (openff.bespokefit.schema.targets.VibrationTargetSchema class method) BespokeFitException bond_denominator (openff.bespokefit.schema.targets.OptGeoTargetSchema attribute) C cached (openff.bespokefit.schema.smirnoff.BaseSMIRKSParameter attribute) calculation_specification (openff.bespokefit.schema.targets.AbInitioTargetSchema attribute) (openff.bespokefit.schema.targets.BaseTargetSchema attribute) (openff.bespokefit.schema.targets.OptGeoTargetSchema attribute) (openff.bespokefit.schema.targets.TorsionProfileTargetSchema attribute) (openff.bespokefit.schema.targets.VibrationTargetSchema attribute) canonical_order_atoms() (in module openff.bespokefit.utilities.molecule) central_bond (openff.bespokefit.schema.tasks.Torsion1DTask attribute) D DeprecationWarningFilter (class in openff.bespokefit.utilities.logging) deregister_fragmentation_engine() (in module openff.bespokefit.fragmentation) (in module openff.bespokefit.fragmentation.base) dihedral_denominator (openff.bespokefit.schema.targets.OptGeoTargetSchema attribute) DihedralSelectionError E eigenvalue_lower_bound (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) energy_cutoff (openff.bespokefit.schema.targets.AbInitioTargetSchema attribute) (openff.bespokefit.schema.targets.TorsionProfileTargetSchema attribute) energy_denominator (openff.bespokefit.schema.targets.AbInitioTargetSchema attribute) (openff.bespokefit.schema.targets.TorsionProfileTargetSchema attribute) error_message (openff.bespokefit.exceptions.BespokeFitException property) error_tolerance (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) error_type (openff.bespokefit.exceptions.BespokeFitException attribute) (openff.bespokefit.exceptions.DihedralSelectionError attribute) (openff.bespokefit.exceptions.ForceFieldError attribute) (openff.bespokefit.exceptions.FragmenterError attribute) (openff.bespokefit.exceptions.MissingReferenceError attribute) (openff.bespokefit.exceptions.MissingTorsionTargetSMARTS attribute) (openff.bespokefit.exceptions.MissingWorkflowError attribute) (openff.bespokefit.exceptions.MoleculeMissMatchError attribute) (openff.bespokefit.exceptions.OptimizerError attribute) (openff.bespokefit.exceptions.QCRecordMissMatchError attribute) (openff.bespokefit.exceptions.SMIRKSTypeError attribute) (openff.bespokefit.exceptions.TargetNotSetError attribute) (openff.bespokefit.exceptions.TargetRegisterError attribute) (openff.bespokefit.exceptions.TaskMissMatchError attribute) (openff.bespokefit.exceptions.WorkflowUpdateError attribute) extras (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) (openff.bespokefit.schema.targets.BaseTargetSchema attribute) F filter() (openff.bespokefit.utilities.logging.DeprecationWarningFilter method), [1] finite_difference_h (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) fit_energy (openff.bespokefit.schema.targets.AbInitioTargetSchema attribute) fit_force (openff.bespokefit.schema.targets.AbInitioTargetSchema attribute) ForceFieldError FragmentationEngine (in module openff.bespokefit.fragmentation) FragmenterError from_remote_records() (openff.bespokefit.schema.data.LocalQCData class method) from_smirnoff() (openff.bespokefit.schema.smirnoff.AngleSMIRKS class method) (openff.bespokefit.schema.smirnoff.BaseSMIRKSParameter class method) (openff.bespokefit.schema.smirnoff.BondSMIRKS class method) (openff.bespokefit.schema.smirnoff.ImproperTorsionSMIRKS class method) (openff.bespokefit.schema.smirnoff.ProperTorsionSMIRKS class method) (openff.bespokefit.schema.smirnoff.VdWSMIRKS class method) G get_atom_symmetries() (in module openff.bespokefit.utilities.molecule) get_fragmentation_engine() (in module openff.bespokefit.fragmentation) (in module openff.bespokefit.fragmentation.base) get_smirnoff_parameter() (in module openff.bespokefit.schema.smirnoff) get_torsion_indices() (in module openff.bespokefit.utilities.molecule) gradient_convergence_threshold (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) grid_spacing (openff.bespokefit.schema.tasks.Torsion1DTaskSpec attribute) group_valence_by_symmetry() (in module openff.bespokefit.utilities.molecule) H header (openff.bespokefit.exceptions.BespokeFitException attribute) (openff.bespokefit.exceptions.DihedralSelectionError attribute) (openff.bespokefit.exceptions.ForceFieldError attribute) (openff.bespokefit.exceptions.FragmenterError attribute) (openff.bespokefit.exceptions.MissingReferenceError attribute) (openff.bespokefit.exceptions.MissingTorsionTargetSMARTS attribute) (openff.bespokefit.exceptions.MissingWorkflowError attribute) (openff.bespokefit.exceptions.MoleculeMissMatchError attribute) (openff.bespokefit.exceptions.OptimizerError attribute) (openff.bespokefit.exceptions.QCRecordMissMatchError attribute) (openff.bespokefit.exceptions.SMIRKSTypeError attribute) (openff.bespokefit.exceptions.TargetNotSetError attribute) (openff.bespokefit.exceptions.TargetRegisterError attribute) (openff.bespokefit.exceptions.TaskMissMatchError attribute) (openff.bespokefit.exceptions.WorkflowUpdateError attribute) I improper_denominator (openff.bespokefit.schema.targets.OptGeoTargetSchema attribute) initial_trust_radius (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) J job_type (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) L list_fragmentation_engines() (in module openff.bespokefit.fragmentation) (in module openff.bespokefit.fragmentation.base) M max_iterations (openff.bespokefit.schema.optimizers.BaseOptimizerSchema attribute) message (openff.bespokefit.schema.Error attribute) (openff.bespokefit.schema.schema.Error attribute) minimum_trust_radius (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) MissingReferenceError MissingTorsionTargetSMARTS MissingWorkflowError mode_reassignment (openff.bespokefit.schema.targets.VibrationTargetSchema attribute) model (openff.bespokefit.schema.tasks.QCGenerationTask attribute) module openff.bespokefit openff.bespokefit.exceptions openff.bespokefit.fragmentation openff.bespokefit.fragmentation.base openff.bespokefit.schema openff.bespokefit.schema.data openff.bespokefit.schema.optimizers openff.bespokefit.schema.schema openff.bespokefit.schema.smirnoff openff.bespokefit.schema.targets openff.bespokefit.schema.tasks openff.bespokefit.utilities openff.bespokefit.utilities.logging openff.bespokefit.utilities.molecule openff.bespokefit.utilities.parallel openff.bespokefit.utilities.pydantic MoleculeMissMatchError N n_conformers (openff.bespokefit.schema.tasks.HessianTaskSpec attribute) (openff.bespokefit.schema.tasks.Torsion1DTaskSpec attribute) n_criteria (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) normalize_weights (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) O objective_convergence_threshold (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) offxml_tag() (openff.bespokefit.schema.smirnoff.AngleHyperparameters class method) (openff.bespokefit.schema.smirnoff.BaseSMIRKSHyperparameters class method) (openff.bespokefit.schema.smirnoff.BondHyperparameters class method) (openff.bespokefit.schema.smirnoff.ImproperTorsionHyperparameters class method) (openff.bespokefit.schema.smirnoff.ProperTorsionHyperparameters class method) (openff.bespokefit.schema.smirnoff.VdWHyperparameters class method) openff.bespokefit module openff.bespokefit.exceptions module openff.bespokefit.fragmentation module openff.bespokefit.fragmentation.base module openff.bespokefit.schema module openff.bespokefit.schema.data module openff.bespokefit.schema.optimizers module openff.bespokefit.schema.schema module openff.bespokefit.schema.smirnoff module openff.bespokefit.schema.targets module openff.bespokefit.schema.tasks module openff.bespokefit.utilities module openff.bespokefit.utilities.logging module openff.bespokefit.utilities.molecule module openff.bespokefit.utilities.parallel module openff.bespokefit.utilities.pydantic module optimization_spec (openff.bespokefit.schema.tasks.HessianTaskSpec attribute) (openff.bespokefit.schema.tasks.Torsion1DTaskSpec attribute) OptimizerError OptimizerSchema (in module openff.bespokefit.schema.optimizers) P penalty_additive (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) penalty_type (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) priors (openff.bespokefit.schema.smirnoff.AngleHyperparameters attribute) (openff.bespokefit.schema.smirnoff.BaseSMIRKSHyperparameters attribute) (openff.bespokefit.schema.smirnoff.BondHyperparameters attribute) (openff.bespokefit.schema.smirnoff.ImproperTorsionHyperparameters attribute) (openff.bespokefit.schema.smirnoff.ProperTorsionHyperparameters attribute) (openff.bespokefit.schema.smirnoff.VdWHyperparameters attribute) program (openff.bespokefit.schema.tasks.QCGenerationTask attribute) Q qc_records (openff.bespokefit.schema.data.LocalQCData attribute) QCDataType (in module openff.bespokefit.schema.data) QCRecordMissMatchError QCTaskSpec (in module openff.bespokefit.schema.data) R reference_data (openff.bespokefit.schema.targets.AbInitioTargetSchema attribute) (openff.bespokefit.schema.targets.BaseTargetSchema attribute) (openff.bespokefit.schema.targets.OptGeoTargetSchema attribute) (openff.bespokefit.schema.targets.TorsionProfileTargetSchema attribute) (openff.bespokefit.schema.targets.VibrationTargetSchema attribute) register_fragmentation_engine() (in module openff.bespokefit.fragmentation) (in module openff.bespokefit.fragmentation.base) S scan_range (openff.bespokefit.schema.tasks.Torsion1DTaskSpec attribute) smiles (openff.bespokefit.schema.tasks.HessianTask attribute) (openff.bespokefit.schema.tasks.OptimizationTask attribute) (openff.bespokefit.schema.tasks.Torsion1DTask attribute) smirks (openff.bespokefit.schema.smirnoff.BaseSMIRKSParameter attribute) SMIRKSTypeError spec (openff.bespokefit.schema.data.BespokeQCData attribute) Status (in module openff.bespokefit.schema) step_convergence_threshold (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) T TargetNotSetError TargetRegisterError task_from_result() (in module openff.bespokefit.schema.tasks) TaskMissMatchError traceback (openff.bespokefit.schema.Error attribute) (openff.bespokefit.schema.schema.Error attribute) type (openff.bespokefit.schema.data.BespokeQCData attribute) (openff.bespokefit.schema.data.LocalQCData attribute) (openff.bespokefit.schema.Error attribute) (openff.bespokefit.schema.optimizers.BaseOptimizerSchema attribute) (openff.bespokefit.schema.optimizers.ForceBalanceSchema attribute) (openff.bespokefit.schema.schema.Error attribute) (openff.bespokefit.schema.smirnoff.AngleHyperparameters attribute) (openff.bespokefit.schema.smirnoff.AngleSMIRKS attribute) (openff.bespokefit.schema.smirnoff.BaseSMIRKSHyperparameters attribute) (openff.bespokefit.schema.smirnoff.BaseSMIRKSParameter attribute) (openff.bespokefit.schema.smirnoff.BondHyperparameters attribute) (openff.bespokefit.schema.smirnoff.BondSMIRKS attribute) (openff.bespokefit.schema.smirnoff.ImproperTorsionHyperparameters attribute) (openff.bespokefit.schema.smirnoff.ImproperTorsionSMIRKS attribute) (openff.bespokefit.schema.smirnoff.ProperTorsionHyperparameters attribute) (openff.bespokefit.schema.smirnoff.ProperTorsionSMIRKS attribute) (openff.bespokefit.schema.smirnoff.VdWHyperparameters attribute) (openff.bespokefit.schema.smirnoff.VdWSMIRKS attribute) (openff.bespokefit.schema.targets.AbInitioTargetSchema attribute) (openff.bespokefit.schema.targets.OptGeoTargetSchema attribute) (openff.bespokefit.schema.targets.TorsionProfileTargetSchema attribute) (openff.bespokefit.schema.targets.VibrationTargetSchema attribute) (openff.bespokefit.schema.tasks.HessianTaskSpec attribute) (openff.bespokefit.schema.tasks.OptimizationTaskSpec attribute) (openff.bespokefit.schema.tasks.QCGenerationTask attribute) (openff.bespokefit.schema.tasks.Torsion1DTaskSpec attribute) V validate_smirks() (in module openff.bespokefit.schema.smirnoff) W weight (openff.bespokefit.schema.targets.BaseTargetSchema attribute) WorkflowUpdateError